codeine.CodingSpace
===================

.. currentmodule:: codeine

.. autoclass:: CodingSpace
   :exclude-members: __init__
   :show-inheritance:




Properties
~~~~~~~~~~

.. autosummary::


   ~CodingSpace.aa_seq

   ~CodingSpace.codon_restrictions

   ~CodingSpace.codon_weights

   ~CodingSpace.context_l

   ~CodingSpace.context_r

   ~CodingSpace.n_valid_sequences

   ~CodingSpace.pinned_codons

   ~CodingSpace.translation_table






Methods
~~~~~~~~~~

.. autosummary::





   ~CodingSpace.clear_forbidden_motifs



   ~CodingSpace.clear_max_homopolymer



   ~CodingSpace.clear_pins



   ~CodingSpace.contains



   ~CodingSpace.enumerate



   ~CodingSpace.load



   ~CodingSpace.mutants



   ~CodingSpace.pin_codons



   ~CodingSpace.sample



   ~CodingSpace.save



   ~CodingSpace.set_forbidden_motifs



   ~CodingSpace.set_max_homopolymer



   ~CodingSpace.set_pinned_codons



   ~CodingSpace.unpin_codons








.. automethod:: CodingSpace.clear_forbidden_motifs




.. automethod:: CodingSpace.clear_max_homopolymer




.. automethod:: CodingSpace.clear_pins




.. automethod:: CodingSpace.contains




.. automethod:: CodingSpace.enumerate




.. automethod:: CodingSpace.load




.. automethod:: CodingSpace.mutants




.. automethod:: CodingSpace.pin_codons




.. automethod:: CodingSpace.sample




.. automethod:: CodingSpace.save




.. automethod:: CodingSpace.set_forbidden_motifs




.. automethod:: CodingSpace.set_max_homopolymer




.. automethod:: CodingSpace.set_pinned_codons




.. automethod:: CodingSpace.unpin_codons