codeine.MutationSpace
=====================

.. currentmodule:: codeine

.. autoclass:: MutationSpace
   :exclude-members: __init__
   :show-inheritance:




Properties
~~~~~~~~~~

.. autosummary::


   ~MutationSpace.aa_seq

   ~MutationSpace.codon_restrictions

   ~MutationSpace.codon_weights

   ~MutationSpace.context_l

   ~MutationSpace.context_r

   ~MutationSpace.free_positions

   ~MutationSpace.frozen_positions

   ~MutationSpace.has_distance_constraints

   ~MutationSpace.n_valid_variants

   ~MutationSpace.pinned_codons

   ~MutationSpace.translation_table






Methods
~~~~~~~~~~

.. autosummary::





   ~MutationSpace.clear_distance_constraints



   ~MutationSpace.contains



   ~MutationSpace.enumerate



   ~MutationSpace.freeze_all



   ~MutationSpace.freeze_positions



   ~MutationSpace.sample



   ~MutationSpace.set_distance_constraints



   ~MutationSpace.set_free_positions



   ~MutationSpace.unfreeze_all



   ~MutationSpace.unfreeze_positions








.. automethod:: MutationSpace.clear_distance_constraints




.. automethod:: MutationSpace.contains




.. automethod:: MutationSpace.enumerate




.. automethod:: MutationSpace.freeze_all




.. automethod:: MutationSpace.freeze_positions




.. automethod:: MutationSpace.sample




.. automethod:: MutationSpace.set_distance_constraints




.. automethod:: MutationSpace.set_free_positions




.. automethod:: MutationSpace.unfreeze_all




.. automethod:: MutationSpace.unfreeze_positions