Index A | B | C | D | E | F | H | L | M | N | P | S | T | U | Y A arabidopsis() (codeine.CodonWeights class method) B by_aa() (codeine.CodonWeights method) C clear_distance_constraints() (codeine.MutationSpace method) clear_forbidden_motifs() (codeine.CodingSpace method) clear_max_homopolymer() (codeine.CodingSpace method) clear_pins() (codeine.CodingSpace method) CodingSpace (class in codeine) CodonWeights (class in codeine) contains() (codeine.CodingSpace method) (codeine.MutationSpace method) custom() (codeine.TranslationTable class method) D drosophila() (codeine.CodonWeights class method) E ecoli() (codeine.CodonWeights class method) enumerate() (codeine.CodingSpace method) (codeine.MutationSpace method) F freeze_all() (codeine.MutationSpace method) freeze_positions() (codeine.MutationSpace method) H human() (codeine.CodonWeights class method) L load() (codeine.CodingSpace class method) M mouse() (codeine.CodonWeights class method) mutants() (codeine.CodingSpace method) MutationSpace (class in codeine) N normalise_sequence() (codeine.TranslationTable method) P pin_codons() (codeine.CodingSpace method) S sample() (codeine.CodingSpace method) (codeine.MutationSpace method) save() (codeine.CodingSpace method) set_distance_constraints() (codeine.MutationSpace method) set_forbidden_motifs() (codeine.CodingSpace method) set_free_positions() (codeine.MutationSpace method) set_max_homopolymer() (codeine.CodingSpace method) set_pinned_codons() (codeine.CodingSpace method) T translate() (codeine.TranslationTable method) TranslationTable (class in codeine) U unfreeze_all() (codeine.MutationSpace method) unfreeze_positions() (codeine.MutationSpace method) uniform() (codeine.CodonWeights class method) unpin_codons() (codeine.CodingSpace method) Y yeast() (codeine.CodonWeights class method)